Index

A

absolute() (atomcloud.plots.Path method) all_axis_scales() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) amps_1D_to_2D() (in module atomcloud.functions) (in module atomcloud.functions.funcs_sumfit) amps_2D_to_1D() (in module atomcloud.functions) (in module atomcloud.functions.funcs_sumfit) analyze_1d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.analyze) analyze_2d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.analyze) analyze_fitdict() (atomcloud.process_fits.analyze.AnalyzeFitDicts method) (atomcloud.process_fits.AnalyzeFitDicts method) (in module atomcloud.process_fits) (in module atomcloud.process_fits.analyze) analyze_parameters() (atomcloud.functions.EnhancedBose2D method) (atomcloud.functions.FixedEnhancedBose2D method) (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.Function1DBase method) (atomcloud.functions.funcs_2d.EnhancedBose2D method) (atomcloud.functions.funcs_2d.FixedEnhancedBose2D method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.Function1DBase method) (atomcloud.functions.FunctionBase method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola2D method) AnalyzeFitDicts (class in atomcloud.process_fits) (class in atomcloud.process_fits.analyze) aoi_area() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) aoi_coordinates() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) approximate_jonquieress_function() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) arg_list() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) atomcloud module atomcloud.analysis module atomcloud.analysis.analysis_utils module atomcloud.analysis.fit_metrics module atomcloud.analysis.image_scales module atomcloud.analysis.rescale_params module atomcloud.common module atomcloud.common.registry module atomcloud.example_data module atomcloud.fits module atomcloud.fits.func_fits module atomcloud.fits.multi_fit module atomcloud.fits.sum_fit module

atomcloud.functions module atomcloud.functions.func_base module atomcloud.functions.funcs_1d module atomcloud.functions.funcs_2d module atomcloud.functions.funcs_sumfit module atomcloud.functions.jax_funcs module atomcloud.functions.jax_funcs.spence module atomcloud.functions.multi_base module atomcloud.functions.multi_funcs module atomcloud.mixed_level module atomcloud.mixed_level.bimodal module atomcloud.mixed_level.mixed_base module atomcloud.mixed_level.thermal module atomcloud.plots module atomcloud.plots.plot_1d module atomcloud.plots.plot_2d module atomcloud.plots.plot_base module atomcloud.plots.plot_sumfit module atomcloud.process_fits module atomcloud.process_fits.analyze module atomcloud.process_fits.base module atomcloud.process_fits.combine module atomcloud.process_fits.format module atomcloud.process_fits.iterate module atomcloud.process_fits.plot module atomcloud.process_fits.rescale module atomcloud.utils module atomcloud.utils.check_utils module atomcloud.utils.fit_utils module atomcloud.utils.img_utils module atomcloud.utils.mask_utils module atomcloud.utils.uncertain_utils module

B

bec() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.bimodal.SimpleBimodal method) (atomcloud.mixed_level.ComplexBimodal method) (atomcloud.mixed_level.SimpleBimodal method)

bec_sums() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method)

C

calc_chi_squared() (in module atomcloud.analysis) (in module atomcloud.analysis.fit_metrics) (in module atomcloud.fits) calc_diff_elements() (in module atomcloud.functions) (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) check_1d_array() (in module atomcloud.process_fits) (in module atomcloud.utils) (in module atomcloud.utils.check_utils) check_2d_array() (in module atomcloud.utils) (in module atomcloud.utils.check_utils) check_2d_coords() (in module atomcloud.process_fits) (in module atomcloud.utils) (in module atomcloud.utils.check_utils) check_contraint_strs() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) check_coords() (in module atomcloud.process_fits) (in module atomcloud.process_fits.plot) check_data() (in module atomcloud.process_fits) (in module atomcloud.process_fits.plot) check_mask() (in module atomcloud.process_fits) (in module atomcloud.process_fits.plot) check_mixed_level_coords() (in module atomcloud.process_fits) (in module atomcloud.process_fits.plot) check_parameters() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) chmod() (atomcloud.plots.Path method) cloud_temperature() (in module atomcloud.analysis) (in module atomcloud.analysis.analysis_utils) CloudFitPlots (class in atomcloud.process_fits) (class in atomcloud.process_fits.plot) combine_level_fits() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine) ComplexBimodal (class in atomcloud.mixed_level) (class in atomcloud.mixed_level.bimodal) ConstrainedMultiFunction (class in atomcloud.functions) (class in atomcloud.functions.multi_base) convert_2d_params_to_1d() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) convert_2d_sum() (atomcloud.functions.FixedOffset method) (atomcloud.functions.funcs_sumfit.FixedOffset method) (atomcloud.functions.funcs_sumfit.Gaussian method) (atomcloud.functions.funcs_sumfit.Parabola method) (atomcloud.functions.funcs_sumfit.SumFitBaseFunc method) (atomcloud.functions.funcs_sumfit.ThomasFermi method) (atomcloud.functions.Gaussian method) (atomcloud.functions.Parabola method) (atomcloud.functions.SumFitBaseFunc method) (atomcloud.functions.ThomasFermi method) convert_all_sums_2d() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) convert_atom_number() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) convert_sum_2D() (atomcloud.functions.FixedOffset method) (atomcloud.functions.funcs_sumfit.FixedOffset method) (atomcloud.functions.funcs_sumfit.Gaussian method) (atomcloud.functions.funcs_sumfit.Parabola method) (atomcloud.functions.funcs_sumfit.SumFitBaseFunc method) (atomcloud.functions.funcs_sumfit.ThomasFermi method) (atomcloud.functions.Gaussian method) (atomcloud.functions.Parabola method) (atomcloud.functions.SumFitBaseFunc method) (atomcloud.functions.ThomasFermi method)

coordinate_transformation2D() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) create_args_to_params() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) create_coord_funcs() (atomcloud.functions.funcs_2d.Function2DBase method) (atomcloud.functions.Function2DBase method) create_default_dicts() (atomcloud.mixed_level.mixed_base.MixedLevelBase method) (atomcloud.mixed_level.MixedLevelBase method) create_dict() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine) create_function() (atomcloud.functions.EnhancedBose1D method) (atomcloud.functions.EnhancedBose2D method) (atomcloud.functions.FixedEnhancedBose1D method) (atomcloud.functions.FixedEnhancedBose2D method) (atomcloud.functions.FixedOffset1D method) (atomcloud.functions.FixedOffset2D method) (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.EnhancedBose1D method) (atomcloud.functions.funcs_1d.FixedEnhancedBose1D method) (atomcloud.functions.funcs_1d.FixedOffset1D method) (atomcloud.functions.funcs_1d.Gaussian1D method) (atomcloud.functions.funcs_1d.Parabola1D method) (atomcloud.functions.funcs_1d.ThomasFermi1D method) (atomcloud.functions.funcs_2d.EnhancedBose2D method) (atomcloud.functions.funcs_2d.FixedEnhancedBose2D method) (atomcloud.functions.funcs_2d.FixedOffset2D method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.funcs_2d.ThomasFermi2D method) (atomcloud.functions.FunctionBase method) (atomcloud.functions.Gaussian1D method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola1D method) (atomcloud.functions.Parabola2D method) (atomcloud.functions.ThomasFermi1D method) (atomcloud.functions.ThomasFermi2D method) create_gaussian1d() (atomcloud.functions.funcs_1d.Gaussian1D method) (atomcloud.functions.Gaussian1D method) create_gaussian2d() (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.Gaussian2D method) create_parabola1d() (atomcloud.functions.funcs_1d.Parabola1D method) (atomcloud.functions.Parabola1D method) create_parabola2d() (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.Parabola2D method) create_parameter_dict() (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.FunctionBase method) create_polylog1d() (atomcloud.functions.FixedEnhancedBose1D method) (atomcloud.functions.funcs_1d.FixedEnhancedBose1D method) create_polylog2d() (in module atomcloud.functions) (in module atomcloud.functions.jax_funcs) (in module atomcloud.functions.jax_funcs.spence) create_spence() (in module atomcloud.functions) (in module atomcloud.functions.jax_funcs) (in module atomcloud.functions.jax_funcs.spence) crop_data() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) crop_image_data() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) curve_fit() (in module atomcloud.fits) cwd() (atomcloud.plots.Path class method)

D

default_bounds() (atomcloud.functions.EnhancedBose1D method) (atomcloud.functions.EnhancedBose2D method) (atomcloud.functions.FixedOffset2D method) (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.EnhancedBose1D method) (atomcloud.functions.funcs_1d.Function1DBase method) (atomcloud.functions.funcs_2d.EnhancedBose2D method) (atomcloud.functions.funcs_2d.FixedOffset2D method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.Function1DBase method) (atomcloud.functions.FunctionBase method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola2D method)

E

EnhancedBose1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) EnhancedBose2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d)

exists() (atomcloud.plots.Path method) expanduser() (atomcloud.plots.Path method)

F

fig_axes() (atomcloud.plots.Plot2DBase method) (atomcloud.plots.plot_2d.Plot2DBase method) find_square_mask() (in module atomcloud.utils) (in module atomcloud.utils.mask_utils) fit_function() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) fit_level() (in module atomcloud.mixed_level) (in module atomcloud.mixed_level.mixed_base) fit_object_init() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) fit_order (atomcloud.mixed_level.bimodal.ComplexBimodal attribute) (atomcloud.mixed_level.bimodal.SimpleBimodal attribute) (atomcloud.mixed_level.ComplexBimodal attribute) (atomcloud.mixed_level.SimpleBimodal attribute) (atomcloud.mixed_level.SimpleThermal attribute) (atomcloud.mixed_level.thermal.SimpleThermal attribute) FitDictRowFormat (class in atomcloud.process_fits) (class in atomcloud.process_fits.format) FixedEnhancedBose1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) FixedEnhancedBose2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) FixedOffset (class in atomcloud.functions) (class in atomcloud.functions.funcs_sumfit)

FixedOffset1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) FixedOffset2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) flatten_dicts() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) flatten_fit_data() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) format_1d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) format_2d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) format_sumfit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) function() (atomcloud.functions.multi_base.MultiFunctionBase method) (atomcloud.functions.MultiFunctionBase method) Function1DBase (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) Function2DBase (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) FunctionBase (class in atomcloud.functions) (class in atomcloud.functions.func_base)

G

Gaussian (class in atomcloud.functions) (class in atomcloud.functions.funcs_sumfit) Gaussian1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) gaussian1D_amp() (atomcloud.functions.funcs_sumfit.Gaussian method) (atomcloud.functions.Gaussian method) Gaussian2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) general_analysis_rescale() (in module atomcloud.functions) (in module atomcloud.functions.funcs_2d) general_lab_widths() (in module atomcloud.functions) (in module atomcloud.functions.funcs_2d) general_rescale() (in module atomcloud.functions) (in module atomcloud.functions.funcs_2d) generate_elliptical_mask2D() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) get() (atomcloud.common.Registry method) (atomcloud.common.registry.Registry method) get_arg_map() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) get_array_bounds() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) get_bimodal_distribution_parameters() (in module atomcloud.example_data) get_bounds() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) get_coordinates() (in module atomcloud.example_data) (in module atomcloud.utils) (in module atomcloud.utils.img_utils) get_data() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method) get_data1d() (atomcloud.plots.Plot2DFit method) (atomcloud.plots.plot_2d.Plot2DFit method) (atomcloud.process_fits.Plot2DFit method) get_default_bounds() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) get_default_seed() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) get_density() (in module atomcloud.example_data) get_example_data() (in module atomcloud.example_data) get_fit() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method) (atomcloud.mixed_level.mixed_base.MixedLevelBase method) (atomcloud.mixed_level.MixedLevelBase method) (atomcloud.mixed_level.SumFit2D method)

get_fit_data() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) get_fit_dicts() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) get_fit_metrics() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) get_fit_obj() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) get_info_dict() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) get_initial_seed() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) get_lab_widths() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) (in module atomcloud.utils.uncertain_utils) get_level_fit() (atomcloud.mixed_level.mixed_base.MixedLevelBase method) (atomcloud.mixed_level.MixedLevelBase method) get_level_type() (in module atomcloud.process_fits) (in module atomcloud.process_fits.base) get_masked_data() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) get_number_scale() (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale) get_seed() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) get_wrapped_angle() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) get_xy_params() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) glob() (atomcloud.plots.Path method) group() (atomcloud.plots.Path method) gsum() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.bimodal.SimpleBimodal method) (atomcloud.mixed_level.ComplexBimodal method) (atomcloud.mixed_level.SimpleBimodal method) (atomcloud.mixed_level.SimpleThermal method) (atomcloud.mixed_level.thermal.SimpleThermal method)

H

handle_title() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method)

handle_uncertainty() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) home() (atomcloud.plots.Path class method)

I

img_aoi_data() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) img_axis_scales() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) img_data_to_sums() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) initial_seed() (atomcloud.functions.FixedOffset1D method) (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.FixedOffset1D method) (atomcloud.functions.funcs_1d.Function1DBase method) (atomcloud.functions.Function1DBase method) (atomcloud.functions.FunctionBase method) integrate_ebose() (in module atomcloud.functions) (in module atomcloud.functions.funcs_2d) integrate_function() (atomcloud.functions.EnhancedBose1D method) (atomcloud.functions.FixedEnhancedBose1D method) (atomcloud.functions.FixedOffset2D method) (atomcloud.functions.funcs_1d.EnhancedBose1D method) (atomcloud.functions.funcs_1d.FixedEnhancedBose1D method) (atomcloud.functions.funcs_1d.Gaussian1D method) (atomcloud.functions.funcs_1d.Parabola1D method) (atomcloud.functions.funcs_1d.ThomasFermi1D method) (atomcloud.functions.funcs_2d.FixedOffset2D method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.funcs_2d.ThomasFermi2D method) (atomcloud.functions.Gaussian1D method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola1D method) (atomcloud.functions.Parabola2D method) (atomcloud.functions.ThomasFermi1D method) (atomcloud.functions.ThomasFermi2D method)

is_axes_params() (atomcloud.fits.sum_fit.SumFit2D method) (atomcloud.fits.SumFit2D method) (atomcloud.mixed_level.SumFit2D method) is_block_device() (atomcloud.plots.Path method) is_char_device() (atomcloud.plots.Path method) is_dir() (atomcloud.plots.Path method) is_fifo() (atomcloud.plots.Path method) is_file() (atomcloud.plots.Path method) is_mount() (atomcloud.plots.Path method) is_nested_list() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) is_socket() (atomcloud.plots.Path method) is_symlink() (atomcloud.plots.Path method) IterateFitDict (class in atomcloud.process_fits) (class in atomcloud.process_fits.iterate) iterdir() (atomcloud.plots.Path method)

L

lchmod() (atomcloud.plots.Path method) level_fits_df() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine)

link_to() (atomcloud.plots.Path method) lstat() (atomcloud.plots.Path method)

M

make_equation_dict() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) make_function() (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.FunctionBase method) mask_data() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method) mixed_level_fit() (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.iterate.IterateFitDict method) (atomcloud.process_fits.IterateFitDict method) (atomcloud.process_fits.plot.CloudFitPlots method) MixedLevelBase (class in atomcloud.mixed_level) (class in atomcloud.mixed_level.mixed_base) mkdir() (atomcloud.plots.Path method) module atomcloud atomcloud.analysis atomcloud.analysis.analysis_utils atomcloud.analysis.fit_metrics atomcloud.analysis.image_scales atomcloud.analysis.rescale_params atomcloud.common atomcloud.common.registry atomcloud.example_data atomcloud.fits atomcloud.fits.func_fits atomcloud.fits.multi_fit atomcloud.fits.sum_fit atomcloud.functions atomcloud.functions.func_base atomcloud.functions.funcs_1d atomcloud.functions.funcs_2d atomcloud.functions.funcs_sumfit atomcloud.functions.jax_funcs atomcloud.functions.jax_funcs.spence atomcloud.functions.multi_base atomcloud.functions.multi_funcs atomcloud.mixed_level atomcloud.mixed_level.bimodal atomcloud.mixed_level.mixed_base atomcloud.mixed_level.thermal atomcloud.plots atomcloud.plots.plot_1d atomcloud.plots.plot_2d atomcloud.plots.plot_base atomcloud.plots.plot_sumfit atomcloud.process_fits atomcloud.process_fits.analyze atomcloud.process_fits.base atomcloud.process_fits.combine atomcloud.process_fits.format atomcloud.process_fits.iterate atomcloud.process_fits.plot atomcloud.process_fits.rescale atomcloud.utils atomcloud.utils.check_utils atomcloud.utils.fit_utils atomcloud.utils.img_utils atomcloud.utils.mask_utils atomcloud.utils.uncertain_utils

multi_level_data() (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.plot.CloudFitPlots method) MultiFit1D (class in atomcloud.fits) (class in atomcloud.fits.func_fits) (class in atomcloud.mixed_level) MultiFit2D (class in atomcloud.fits) (class in atomcloud.fits.func_fits) (class in atomcloud.mixed_level) MultiFunc (class in atomcloud.functions) (class in atomcloud.functions.multi_funcs) MultiFunction1D (class in atomcloud.fits) (class in atomcloud.functions) (class in atomcloud.functions.multi_funcs) (class in atomcloud.plots) MultiFunction2D (class in atomcloud.fits) (class in atomcloud.functions) (class in atomcloud.functions.multi_funcs) (class in atomcloud.plots) MultiFunctionBase (class in atomcloud.functions) (class in atomcloud.functions.multi_base) MultiFunctionFit (class in atomcloud.fits) (class in atomcloud.fits.multi_fit)

N

nominal_list() (in module atomcloud.fits) (in module atomcloud.plots) (in module atomcloud.utils) (in module atomcloud.utils.uncertain_utils)

nominal_value() (in module atomcloud.utils)

O

od_nd_scale() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) open() (atomcloud.plots.Path method)

optical_cross_section() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) owner() (atomcloud.plots.Path method)

P

Parabola (class in atomcloud.functions) (class in atomcloud.functions.funcs_sumfit) Parabola1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) parabola1D_amp() (atomcloud.functions.funcs_sumfit.Parabola method) (atomcloud.functions.Parabola method) Parabola2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) parameter_analysis() (in module atomcloud.process_fits) (in module atomcloud.process_fits.analyze) params_to_args() (atomcloud.functions.ConstrainedMultiFunction method) (atomcloud.functions.multi_base.ConstrainedMultiFunction method) Path (class in atomcloud.plots) pixel_scale() (in module atomcloud.analysis) (in module atomcloud.analysis.image_scales) Plot1DFit (class in atomcloud.plots) (class in atomcloud.plots.plot_1d) (class in atomcloud.process_fits) Plot2DBase (class in atomcloud.plots) (class in atomcloud.plots.plot_2d) Plot2DFit (class in atomcloud.plots) (class in atomcloud.plots.plot_2d) (class in atomcloud.process_fits) Plot2DSumFit (class in atomcloud.plots) (class in atomcloud.plots.plot_sumfit) (class in atomcloud.process_fits) plot_1d() (atomcloud.plots.Plot2DBase method) (atomcloud.plots.plot_2d.Plot2DBase method) plot_1Dfit() (atomcloud.plots.Plot1DFit method) (atomcloud.plots.plot_1d.Plot1DFit method) (atomcloud.process_fits.Plot1DFit method) plot_2d() (atomcloud.plots.Plot2DBase method) (atomcloud.plots.plot_2d.Plot2DBase method) plot_data() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method) plot_fit() (atomcloud.plots.Plot1DFit method) (atomcloud.plots.Plot2DFit method) (atomcloud.plots.Plot2DSumFit method) (atomcloud.plots.plot_1d.Plot1DFit method) (atomcloud.plots.plot_2d.Plot2DFit method) (atomcloud.plots.plot_sumfit.Plot2DSumFit method) (atomcloud.process_fits.Plot1DFit method) (atomcloud.process_fits.Plot2DFit method) (atomcloud.process_fits.Plot2DSumFit method)

plot_fitdict() (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.plot.CloudFitPlots method) (in module atomcloud.process_fits) (in module atomcloud.process_fits.plot) PlotBase (class in atomcloud.plots) (class in atomcloud.plots.plot_base) polylog_val() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) process_all_fitdicts() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine) process_fitdict() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine) process_fitdict1d() (atomcloud.process_fits.analyze.AnalyzeFitDicts method) (atomcloud.process_fits.AnalyzeFitDicts method) (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.FitDictRowFormat method) (atomcloud.process_fits.format.FitDictRowFormat method) (atomcloud.process_fits.iterate.IterateFitDict method) (atomcloud.process_fits.IterateFitDict method) (atomcloud.process_fits.plot.CloudFitPlots method) (atomcloud.process_fits.rescale.RescaleFitDicts method) (atomcloud.process_fits.RescaleFitDicts method) process_fitdict2d() (atomcloud.process_fits.analyze.AnalyzeFitDicts method) (atomcloud.process_fits.AnalyzeFitDicts method) (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.FitDictRowFormat method) (atomcloud.process_fits.format.FitDictRowFormat method) (atomcloud.process_fits.iterate.IterateFitDict method) (atomcloud.process_fits.IterateFitDict method) (atomcloud.process_fits.plot.CloudFitPlots method) (atomcloud.process_fits.rescale.RescaleFitDicts method) (atomcloud.process_fits.RescaleFitDicts method)

R

read_bytes() (atomcloud.plots.Path method) read_text() (atomcloud.plots.Path method) readlink() (atomcloud.plots.Path method) recursively_convert_nominal() (in module atomcloud.utils) (in module atomcloud.utils.uncertain_utils) register() (atomcloud.common.Registry method) (atomcloud.common.registry.Registry method) Registry (class in atomcloud.common) (class in atomcloud.common.registry) rename() (atomcloud.plots.Path method) replace() (atomcloud.plots.Path method) rescale_1d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale) rescale_1d_params() (in module atomcloud.analysis) (in module atomcloud.analysis.rescale_params) (in module atomcloud.functions) rescale_2d_fit() (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale) rescale_2d_params() (in module atomcloud.analysis) (in module atomcloud.analysis.rescale_params) (in module atomcloud.functions) rescale_analysis_params() (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.Function1DBase method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.Function1DBase method) (atomcloud.functions.FunctionBase method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola2D method) rescale_fit_dict() (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale) rescale_fitdict() (atomcloud.process_fits.rescale.RescaleFitDicts method) (atomcloud.process_fits.RescaleFitDicts method) (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale)

rescale_mixed_axis() (in module atomcloud.analysis) (in module atomcloud.analysis.rescale_params) rescale_parameters() (atomcloud.functions.FixedOffset1D method) (atomcloud.functions.FixedOffset2D method) (atomcloud.functions.func_base.FunctionBase method) (atomcloud.functions.funcs_1d.FixedOffset1D method) (atomcloud.functions.funcs_1d.Function1DBase method) (atomcloud.functions.funcs_2d.FixedOffset2D method) (atomcloud.functions.funcs_2d.Gaussian2D method) (atomcloud.functions.funcs_2d.Parabola2D method) (atomcloud.functions.Function1DBase method) (atomcloud.functions.FunctionBase method) (atomcloud.functions.Gaussian2D method) (atomcloud.functions.Parabola2D method) (in module atomcloud.analysis) (in module atomcloud.analysis.rescale_params) rescale_params() (in module atomcloud.process_fits) (in module atomcloud.process_fits.rescale) RescaleFitDicts (class in atomcloud.process_fits) (class in atomcloud.process_fits.rescale) resolve() (atomcloud.plots.Path method) rglob() (atomcloud.plots.Path method) rmdir() (atomcloud.plots.Path method) rotate_coordinates2D() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) row_fitdict() (atomcloud.process_fits.FitDictRowFormat method) (atomcloud.process_fits.format.FitDictRowFormat method) (in module atomcloud.process_fits) (in module atomcloud.process_fits.format)

S

samefile() (atomcloud.plots.Path method) save_fit_coords() (atomcloud.mixed_level.mixed_base.MixedLevelBase method) (atomcloud.mixed_level.MixedLevelBase method) save_fit_data() (atomcloud.mixed_level.mixed_base.MixedLevelBase method) (atomcloud.mixed_level.MixedLevelBase method) save_plot() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method) set_colorbar_position() (atomcloud.plots.Plot2DBase method) (atomcloud.plots.plot_2d.Plot2DBase method) set_cutoff_length() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) set_fixed_length() (atomcloud.fits.multi_fit.MultiFunctionFit method) (atomcloud.fits.MultiFunctionFit method) signature() (in module atomcloud.functions) SimpleBimodal (class in atomcloud.mixed_level) (class in atomcloud.mixed_level.bimodal) SimpleThermal (class in atomcloud.mixed_level) (class in atomcloud.mixed_level.thermal) single_level() (atomcloud.process_fits.iterate.IterateFitDict method) (atomcloud.process_fits.IterateFitDict method)

stat() (atomcloud.plots.Path method) sum_data_mask() (atomcloud.plots.Plot2DFit method) (atomcloud.plots.plot_2d.Plot2DFit method) (atomcloud.process_fits.Plot2DFit method) (in module atomcloud.utils) (in module atomcloud.utils.img_utils) sum_fit() (atomcloud.process_fits.CloudFitPlots method) (atomcloud.process_fits.FitDictRowFormat method) (atomcloud.process_fits.format.FitDictRowFormat method) (atomcloud.process_fits.iterate.IterateFitDict method) (atomcloud.process_fits.IterateFitDict method) (atomcloud.process_fits.plot.CloudFitPlots method) sum_img_data() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) SumFit2D (class in atomcloud.fits) (class in atomcloud.fits.sum_fit) (class in atomcloud.mixed_level) SumFitBaseFunc (class in atomcloud.functions) (class in atomcloud.functions.funcs_sumfit) symlink_to() (atomcloud.plots.Path method)

T

tf1d_amp() (atomcloud.functions.funcs_sumfit.ThomasFermi method) (atomcloud.functions.ThomasFermi method) tf_sum() (atomcloud.mixed_level.bimodal.SimpleBimodal method) (atomcloud.mixed_level.SimpleBimodal method) tfsum() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method) thermal() (atomcloud.mixed_level.bimodal.SimpleBimodal method) (atomcloud.mixed_level.SimpleBimodal method) (atomcloud.mixed_level.SimpleThermal method) (atomcloud.mixed_level.thermal.SimpleThermal method) thermal1() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method) thermal2() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method) thermal3() (atomcloud.mixed_level.bimodal.ComplexBimodal method) (atomcloud.mixed_level.ComplexBimodal method)

ThomasFermi (class in atomcloud.functions) (class in atomcloud.functions.funcs_sumfit) ThomasFermi1D (class in atomcloud.functions) (class in atomcloud.functions.funcs_1d) ThomasFermi2D (class in atomcloud.functions) (class in atomcloud.functions.funcs_2d) title_string() (atomcloud.plots.plot_base.PlotBase method) (atomcloud.plots.PlotBase method) total_fit_df() (in module atomcloud.process_fits) (in module atomcloud.process_fits.combine) touch() (atomcloud.plots.Path method) translate_coordinates2D() (in module atomcloud.utils) (in module atomcloud.utils.fit_utils) tuple_coords1d() (in module atomcloud.utils) (in module atomcloud.utils.img_utils) type_fitdict() (in module atomcloud.process_fits) (in module atomcloud.process_fits.base)

U

unique_equation_names() (in module atomcloud.process_fits) (in module atomcloud.process_fits.format) unlink() (atomcloud.plots.Path method)

unpack_fit_dicts() (atomcloud.plots.Plot2DSumFit method) (atomcloud.plots.plot_sumfit.Plot2DSumFit method) (atomcloud.process_fits.Plot2DSumFit method)

W

write_bytes() (atomcloud.plots.Path method)

write_text() (atomcloud.plots.Path method)