atomcloud package

Subpackages

• atomcloud.analysis package
  • Submodules
    • atomcloud.analysis.analysis_utils module
      • cloud_temperature()
    • atomcloud.analysis.fit_metrics module
      • calc_chi_squared()
    • atomcloud.analysis.image_scales module
      • all_axis_scales()
      • convert_atom_number()
      • img_axis_scales()
      • od_nd_scale()
      • optical_cross_section()
      • pixel_scale()
    • atomcloud.analysis.rescale_params module
      • rescale_1d_params()
      • rescale_2d_params()
      • rescale_mixed_axis()
      • rescale_parameters()
  • Module contents
    • all_axis_scales()
    • calc_chi_squared()
    • cloud_temperature()
    • convert_atom_number()
    • img_axis_scales()
    • od_nd_scale()
    • optical_cross_section()
    • pixel_scale()
    • rescale_1d_params()
    • rescale_2d_params()
    • rescale_mixed_axis()
    • rescale_parameters()
• atomcloud.common package
  • Submodules
    • atomcloud.common.registry module
      • Registry
  • Module contents
    • Registry
      • Registry.get()
      • Registry.register()
• atomcloud.fits package
  • Submodules
    • atomcloud.fits.func_fits module
      • MultiFit1D
      • MultiFit2D
    • atomcloud.fits.multi_fit module
      • MultiFunctionFit
    • atomcloud.fits.sum_fit module
      • SumFit2D
  • Module contents
    • MultiFit1D
    • MultiFit2D
    • MultiFunction1D
    • MultiFunction2D
    • MultiFunctionFit
      • MultiFunctionFit.fit_object_init()
      • MultiFunctionFit.flatten_fit_data()
      • MultiFunctionFit.get_default_bounds()
      • MultiFunctionFit.get_default_seed()
      • MultiFunctionFit.get_fit()
      • MultiFunctionFit.get_fit_metrics()
      • MultiFunctionFit.get_fit_obj()
      • MultiFunctionFit.get_info_dict()
      • MultiFunctionFit.handle_uncertainty()
      • MultiFunctionFit.set_cutoff_length()
      • MultiFunctionFit.set_fixed_length()
    • SumFit2D
      • SumFit2D.convert_2d_params_to_1d()
      • SumFit2D.convert_all_sums_2d()
      • SumFit2D.get_bounds()
      • SumFit2D.get_fit()
      • SumFit2D.get_fit_dicts()
      • SumFit2D.get_initial_seed()
      • SumFit2D.get_seed()
      • SumFit2D.get_xy_params()
      • SumFit2D.is_axes_params()
    • calc_chi_squared()
    • curve_fit()
    • nominal_list()
• atomcloud.functions package
  • Submodules
    • atomcloud.functions.func_base module
      • FunctionBase
    • atomcloud.functions.funcs_1d module
      • EnhancedBose1D
      • FixedEnhancedBose1D
      • FixedOffset1D
      • Function1DBase
      • Gaussian1D
      • Parabola1D
      • ThomasFermi1D
    • atomcloud.functions.funcs_2d module
      • EnhancedBose2D
      • FixedEnhancedBose2D
      • FixedOffset2D
      • Function2DBase
      • Gaussian2D
      • Parabola2D
      • ThomasFermi2D
      • general_analysis_rescale()
      • general_lab_widths()
      • general_rescale()
      • integrate_ebose()
    • atomcloud.functions.funcs_sumfit module
      • FixedOffset
      • Gaussian
      • Parabola
      • SumFitBaseFunc
      • ThomasFermi
      • amps_1D_to_2D()
      • amps_2D_to_1D()
    • atomcloud.functions.multi_base module
      • ConstrainedMultiFunction
      • MultiFunctionBase
    • atomcloud.functions.multi_funcs module
      • MultiFunc
      • MultiFunction1D
      • MultiFunction2D
  • Module contents
    • ConstrainedMultiFunction
      • ConstrainedMultiFunction.arg_list()
      • ConstrainedMultiFunction.check_contraint_strs()
      • ConstrainedMultiFunction.check_parameters()
      • ConstrainedMultiFunction.create_args_to_params()
      • ConstrainedMultiFunction.fit_function()
      • ConstrainedMultiFunction.get_arg_map()
      • ConstrainedMultiFunction.params_to_args()
    • EnhancedBose1D
      • EnhancedBose1D.create_function()
      • EnhancedBose1D.default_bounds()
      • EnhancedBose1D.integrate_function()
    • EnhancedBose2D
      • EnhancedBose2D.analyze_parameters()
      • EnhancedBose2D.create_function()
      • EnhancedBose2D.default_bounds()
    • FixedEnhancedBose1D
      • FixedEnhancedBose1D.create_function()
      • FixedEnhancedBose1D.create_polylog1d()
      • FixedEnhancedBose1D.integrate_function()
    • FixedEnhancedBose2D
      • FixedEnhancedBose2D.analyze_parameters()
      • FixedEnhancedBose2D.create_function()
    • FixedOffset
      • FixedOffset.convert_2d_sum()
      • FixedOffset.convert_sum_2D()
    • FixedOffset1D
      • FixedOffset1D.create_function()
      • FixedOffset1D.initial_seed()
      • FixedOffset1D.rescale_parameters()
    • FixedOffset2D
      • FixedOffset2D.create_function()
      • FixedOffset2D.default_bounds()
      • FixedOffset2D.integrate_function()
      • FixedOffset2D.rescale_parameters()
    • Function1DBase
      • Function1DBase.analyze_parameters()
      • Function1DBase.default_bounds()
      • Function1DBase.initial_seed()
      • Function1DBase.rescale_analysis_params()
      • Function1DBase.rescale_parameters()
    • Function2DBase
      • Function2DBase.create_coord_funcs()
    • FunctionBase
      • FunctionBase.analyze_parameters()
      • FunctionBase.create_function()
      • FunctionBase.create_parameter_dict()
      • FunctionBase.default_bounds()
      • FunctionBase.initial_seed()
      • FunctionBase.make_function()
      • FunctionBase.rescale_analysis_params()
      • FunctionBase.rescale_parameters()
    • Gaussian
      • Gaussian.convert_2d_sum()
      • Gaussian.convert_sum_2D()
      • Gaussian.gaussian1D_amp()
    • Gaussian1D
      • Gaussian1D.create_function()
      • Gaussian1D.create_gaussian1d()
      • Gaussian1D.integrate_function()
    • Gaussian2D
      • Gaussian2D.analyze_parameters()
      • Gaussian2D.create_function()
      • Gaussian2D.create_gaussian2d()
      • Gaussian2D.default_bounds()
      • Gaussian2D.integrate_function()
      • Gaussian2D.rescale_analysis_params()
      • Gaussian2D.rescale_parameters()
    • MultiFunc
    • MultiFunction1D
    • MultiFunction2D
    • MultiFunctionBase
      • MultiFunctionBase.function()
    • Parabola
      • Parabola.convert_2d_sum()
      • Parabola.convert_sum_2D()
      • Parabola.parabola1D_amp()
    • Parabola1D
      • Parabola1D.create_function()
      • Parabola1D.create_parabola1d()
      • Parabola1D.integrate_function()
    • Parabola2D
      • Parabola2D.analyze_parameters()
      • Parabola2D.create_function()
      • Parabola2D.create_parabola2d()
      • Parabola2D.default_bounds()
      • Parabola2D.integrate_function()
      • Parabola2D.rescale_analysis_params()
      • Parabola2D.rescale_parameters()
    • SumFitBaseFunc
      • SumFitBaseFunc.convert_2d_sum()
      • SumFitBaseFunc.convert_sum_2D()
    • ThomasFermi
      • ThomasFermi.convert_2d_sum()
      • ThomasFermi.convert_sum_2D()
      • ThomasFermi.tf1d_amp()
    • ThomasFermi1D
      • ThomasFermi1D.create_function()
      • ThomasFermi1D.integrate_function()
    • ThomasFermi2D
      • ThomasFermi2D.create_function()
      • ThomasFermi2D.integrate_function()
    • amps_1D_to_2D()
    • amps_2D_to_1D()
    • calc_diff_elements()
    • create_polylog2d()
    • create_spence()
    • general_analysis_rescale()
    • general_lab_widths()
    • general_rescale()
    • integrate_ebose()
    • rescale_1d_params()
    • rescale_2d_params()
    • signature()
• atomcloud.mixed_level package
  • Submodules
    • atomcloud.mixed_level.bimodal module
      • ComplexBimodal
      • SimpleBimodal
    • atomcloud.mixed_level.mixed_base module
      • MixedLevelBase
      • fit_level()
    • atomcloud.mixed_level.thermal module
      • SimpleThermal
  • Module contents
    • ComplexBimodal
      • ComplexBimodal.bec()
      • ComplexBimodal.bec_sums()
      • ComplexBimodal.fit_order
      • ComplexBimodal.get_fit()
      • ComplexBimodal.gsum()
      • ComplexBimodal.tfsum()
      • ComplexBimodal.thermal1()
      • ComplexBimodal.thermal2()
      • ComplexBimodal.thermal3()
    • MixedLevelBase
      • MixedLevelBase.create_default_dicts()
      • MixedLevelBase.get_fit()
      • MixedLevelBase.get_level_fit()
      • MixedLevelBase.save_fit_coords()
      • MixedLevelBase.save_fit_data()
    • MultiFit1D
    • MultiFit2D
    • SimpleBimodal
      • SimpleBimodal.bec()
      • SimpleBimodal.fit_order
      • SimpleBimodal.gsum()
      • SimpleBimodal.tf_sum()
      • SimpleBimodal.thermal()
    • SimpleThermal
      • SimpleThermal.fit_order
      • SimpleThermal.gsum()
      • SimpleThermal.thermal()
    • SumFit2D
      • SumFit2D.convert_2d_params_to_1d()
      • SumFit2D.convert_all_sums_2d()
      • SumFit2D.get_bounds()
      • SumFit2D.get_fit()
      • SumFit2D.get_fit_dicts()
      • SumFit2D.get_initial_seed()
      • SumFit2D.get_seed()
      • SumFit2D.get_xy_params()
      • SumFit2D.is_axes_params()
    • fit_level()
• atomcloud.plots package
  • Submodules
    • atomcloud.plots.plot_1d module
      • Plot1DFit
    • atomcloud.plots.plot_2d module
      • Plot2DBase
      • Plot2DFit
    • atomcloud.plots.plot_base module
      • PlotBase
    • atomcloud.plots.plot_sumfit module
      • Plot2DSumFit
  • Module contents
    • MultiFunction1D
    • MultiFunction2D
    • Path
      • Path.absolute()
      • Path.chmod()
      • Path.cwd()
      • Path.exists()
      • Path.expanduser()
      • Path.glob()
      • Path.group()
      • Path.home()
      • Path.is_block_device()
      • Path.is_char_device()
      • Path.is_dir()
      • Path.is_fifo()
      • Path.is_file()
      • Path.is_mount()
      • Path.is_socket()
      • Path.is_symlink()
      • Path.iterdir()
      • Path.lchmod()
      • Path.link_to()
      • Path.lstat()
      • Path.mkdir()
      • Path.open()
      • Path.owner()
      • Path.read_bytes()
      • Path.read_text()
      • Path.readlink()
      • Path.rename()
      • Path.replace()
      • Path.resolve()
      • Path.rglob()
      • Path.rmdir()
      • Path.samefile()
      • Path.stat()
      • Path.symlink_to()
      • Path.touch()
      • Path.unlink()
      • Path.write_bytes()
      • Path.write_text()
    • Plot1DFit
      • Plot1DFit.plot_1Dfit()
      • Plot1DFit.plot_fit()
    • Plot2DBase
      • Plot2DBase.fig_axes()
      • Plot2DBase.plot_1d()
      • Plot2DBase.plot_2d()
      • Plot2DBase.set_colorbar_position()
    • Plot2DFit
      • Plot2DFit.get_data1d()
      • Plot2DFit.plot_fit()
      • Plot2DFit.sum_data_mask()
    • Plot2DSumFit
      • Plot2DSumFit.plot_fit()
      • Plot2DSumFit.unpack_fit_dicts()
    • PlotBase
      • PlotBase.get_data()
      • PlotBase.handle_title()
      • PlotBase.mask_data()
      • PlotBase.plot_data()
      • PlotBase.save_plot()
      • PlotBase.title_string()
    • nominal_list()
• atomcloud.process_fits package
  • Submodules
    • atomcloud.process_fits.analyze module
      • AnalyzeFitDicts
      • analyze_1d_fit()
      • analyze_2d_fit()
      • analyze_fitdict()
      • parameter_analysis()
    • atomcloud.process_fits.base module
      • get_level_type()
      • type_fitdict()
    • atomcloud.process_fits.combine module
      • combine_level_fits()
      • create_dict()
      • level_fits_df()
      • process_all_fitdicts()
      • process_fitdict()
      • total_fit_df()
    • atomcloud.process_fits.format module
      • FitDictRowFormat
      • flatten_dicts()
      • format_1d_fit()
      • format_2d_fit()
      • format_sumfit()
      • make_equation_dict()
      • row_fitdict()
      • unique_equation_names()
    • atomcloud.process_fits.iterate module
      • IterateFitDict
    • atomcloud.process_fits.plot module
      • CloudFitPlots
      • check_coords()
      • check_data()
      • check_mask()
      • check_mixed_level_coords()
      • plot_fitdict()
    • atomcloud.process_fits.rescale module
      • RescaleFitDicts
      • get_number_scale()
      • rescale_1d_fit()
      • rescale_2d_fit()
      • rescale_fit_dict()
      • rescale_fitdict()
      • rescale_params()
  • Module contents
    • AnalyzeFitDicts
      • AnalyzeFitDicts.analyze_fitdict()
      • AnalyzeFitDicts.process_fitdict1d()
      • AnalyzeFitDicts.process_fitdict2d()
    • CloudFitPlots
      • CloudFitPlots.mixed_level_fit()
      • CloudFitPlots.multi_level_data()
      • CloudFitPlots.plot_fitdict()
      • CloudFitPlots.process_fitdict1d()
      • CloudFitPlots.process_fitdict2d()
      • CloudFitPlots.sum_fit()
    • FitDictRowFormat
      • FitDictRowFormat.process_fitdict1d()
      • FitDictRowFormat.process_fitdict2d()
      • FitDictRowFormat.row_fitdict()
      • FitDictRowFormat.sum_fit()
    • IterateFitDict
      • IterateFitDict.mixed_level_fit()
      • IterateFitDict.process_fitdict1d()
      • IterateFitDict.process_fitdict2d()
      • IterateFitDict.single_level()
      • IterateFitDict.sum_fit()
    • Plot1DFit
      • Plot1DFit.plot_1Dfit()
      • Plot1DFit.plot_fit()
    • Plot2DFit
      • Plot2DFit.get_data1d()
      • Plot2DFit.plot_fit()
      • Plot2DFit.sum_data_mask()
    • Plot2DSumFit
      • Plot2DSumFit.plot_fit()
      • Plot2DSumFit.unpack_fit_dicts()
    • RescaleFitDicts
      • RescaleFitDicts.process_fitdict1d()
      • RescaleFitDicts.process_fitdict2d()
      • RescaleFitDicts.rescale_fitdict()
    • analyze_1d_fit()
    • analyze_2d_fit()
    • analyze_fitdict()
    • check_1d_array()
    • check_2d_coords()
    • check_coords()
    • check_data()
    • check_mask()
    • check_mixed_level_coords()
    • combine_level_fits()
    • create_dict()
    • flatten_dicts()
    • format_1d_fit()
    • format_2d_fit()
    • format_sumfit()
    • get_level_type()
    • get_number_scale()
    • level_fits_df()
    • make_equation_dict()
    • parameter_analysis()
    • plot_fitdict()
    • process_all_fitdicts()
    • process_fitdict()
    • rescale_1d_fit()
    • rescale_2d_fit()
    • rescale_fit_dict()
    • rescale_fitdict()
    • rescale_params()
    • row_fitdict()
    • total_fit_df()
    • type_fitdict()
    • unique_equation_names()
• atomcloud.utils package
  • Submodules
    • atomcloud.utils.check_utils module
      • check_1d_array()
      • check_2d_array()
      • check_2d_coords()
    • atomcloud.utils.fit_utils module
      • approximate_jonquieress_function()
      • calc_diff_elements()
      • coordinate_transformation2D()
      • generate_elliptical_mask2D()
      • get_array_bounds()
      • get_lab_widths()
      • get_masked_data()
      • get_wrapped_angle()
      • is_nested_list()
      • polylog_val()
      • rotate_coordinates2D()
      • translate_coordinates2D()
    • atomcloud.utils.img_utils module
      • aoi_area()
      • aoi_coordinates()
      • crop_data()
      • crop_image_data()
      • get_coordinates()
      • get_fit_data()
      • img_aoi_data()
      • img_data_to_sums()
      • sum_data_mask()
      • sum_img_data()
      • tuple_coords1d()
    • atomcloud.utils.mask_utils module
      • find_square_mask()
    • atomcloud.utils.uncertain_utils module
      • get_lab_widths()
      • nominal_list()
      • recursively_convert_nominal()
  • Module contents
    • aoi_area()
    • aoi_coordinates()
    • approximate_jonquieress_function()
    • calc_diff_elements()
    • check_1d_array()
    • check_2d_array()
    • check_2d_coords()
    • coordinate_transformation2D()
    • crop_data()
    • crop_image_data()
    • find_square_mask()
    • generate_elliptical_mask2D()
    • get_array_bounds()
    • get_coordinates()
    • get_fit_data()
    • get_lab_widths()
    • get_masked_data()
    • get_wrapped_angle()
    • img_aoi_data()
    • img_data_to_sums()
    • is_nested_list()
    • nominal_list()
    • nominal_value()
    • polylog_val()
    • recursively_convert_nominal()
    • rotate_coordinates2D()
    • sum_data_mask()
    • sum_img_data()
    • translate_coordinates2D()
    • tuple_coords1d()

Submodules

• atomcloud.example_data module
  • get_bimodal_distribution_parameters()
  • get_coordinates()
  • get_density()
  • get_example_data()

Module contents

Created on Mon Mar 14 19:26:59 2022

@author: hofer